Ringreads

The followings are R and Ruby scrips for "The Evidential Statistics of Genetic Assembly: Bootstrapping a Reference Sequence." You can download the scripts by clicking the file names. Please read the header information of each file for instruction.

Random read generator from a circular reference w/o any errors

• ringreads.rb
• ref.rb
• doRingreads.rb
• rseeds.txt

Assemble procedure for each assembly programs

• doA5miseq.rb
• doFermi.rb
• doIdba.rb
• doMegahit.rb
• doMinia.rb
• doMira.rb
• doPlatanus.rb
• doSpades.rb
• doTrinity.rb
• doUnicycler.rb
• doVelvet.rb

gpuga

You can install gpuga by hitting "R CMD INSTALL gauge_0.0.1.tar.gz" in your terminal window.

• gpuga_0.0.1.tar.gz